ROTIFER
  • Data access
  • API
  • Contributing
  • License
/
  • Data access
  • API reference
    • rotifer
      • alchemy
        • connect
          • clickhouse
      • cluster
        • cluster
          • cluster_neighbor
      • core
        • cli
          • action
          • check_args
          • dotdict
          • extend_yaml
          • parser
          • version
        • functions
          • chunks
          • dotdict
          • findDataFiles
          • get_some_info
          • hierarchy_to_dataframe
          • import_path
          • loadClasses
          • loadConfig
          • md5
          • not_kwargs
          • open_compressed
          • openread
          • rdoc
          • restore_session
          • save_session
          • vmsg
          • who_is_calling
          • yaml_search
        • io
          • ftp
            • open
        • loadpath
          • path
        • log
          • log
          • logger
        • logger
          • get_logger
          • TqdmLoggingHandler
        • methods
          • CoreMethods
        • time
          • rtime
      • db
        • cli
          • rneighbors
          • sql
        • core
          • BaseCursor
        • delegator
          • DelegatorCursor
          • SequentialDelegatorCursor
        • local
          • easel
            • FastaCursor
          • ete3
            • TaxonomyCursor
        • methods
          • GeneNeighborhoodCursor
          • GenomeCursor
          • GenomeFeaturesCursor
          • IPGCursor
          • MappingCursor
          • SequenceCursor
        • ncbi
          • entrez
            • elink
            • FastaCursor
            • GeneNeighborhoodCursor
            • IPGCursor
            • nucleotide2assembly
            • NucleotideFeaturesCursor
            • SequenceCursor
            • TaxonomyCursor
          • ftp
            • connection
            • GeneNeighborhoodCursor
            • GenomeCursor
            • GenomeFeaturesCursor
          • mirror
            • GeneNeighborhoodCursor
            • GenomeCursor
            • GenomeFeaturesCursor
          • utils
            • best_ipgs
            • ipgs_to_dicts
          • assemblies
          • FastaCursor
          • GeneNeighborhoodCursor
          • GenomeCursor
          • GenomeFeaturesCursor
          • IPGCursor
          • SequenceCursor
          • TaxonomyCursor
        • parallel
          • GeneNeighborhoodCursor
          • SimpleParallelProcessCursor
        • sql
          • sqlite3
            • BaseSQLite3Cursor
            • GeneNeighborhoodCursor
            • IPGCursor
        • uniprot
          • webapi
            • idmapping
              • AF_link
              • af_to_seq
              • check_id_mapping_results_ready
              • check_response
              • combine_batches
              • decode_results
              • genbank_to_uniprot
              • get_batch
              • get_data_frame_from_tsv_results
              • get_id_mapping_results_link
              • get_id_mapping_results_search
              • get_id_mapping_results_stream
              • get_next_link
              • get_xml_namespace
              • MappingCursor
              • merge_xml_results
              • print_progress_batches
              • submit_id_mapping
          • BaseUniProtDelegatorCursor
          • BaseUniProtRecordCursor
          • FastaCursor
          • MappingCursor
          • SequenceCursor
          • TaxonomyCursor
        • proteins
      • genome
        • data
          • NeighborhoodDF
        • database
          • database
        • db
          • clickhouse
            • clickhouse
          • postgres
            • postgres
        • io
          • GenbankAssemblyFromFilename
          • gff
          • parse
          • SequenceNameToAssembly
        • utils
          • add_gembase_qualifiers
          • seqrecords_to_dataframe
      • interval
        • utils
          • architecture
          • complement
          • filter_nonoverlapping_regions
      • io
        • dali
          • dali_tsv
        • fileinput
          • FileInput
          • hook_compressed_text
          • input
      • pandas
        • functions
          • optimize_memory_usage
          • pad
          • print_everything
          • show_display_options
          • to_color
        • default_block_rows
        • default_header
        • to_blocks
        • to_network
        • to_string
      • pipeline
        • Annotatable
      • taxonomy
        • utils
          • lineage
          • loadPreferredTaxa
      • view
        • functions
          • display_html_popup_from_file
          • is_running_in_jupyter
  • Contributing
    • Documentation
      • Documenting code
      • Building the docs
      • Design system
      • FAQ
  • License
  1. ROTIFER /
  2. API reference /
  3. rotifer.genome.data

rotifer.genome.data#

Classes

NeighborhoodDF(*args, **kwargs)

Previous
rotifer.genome
Next
rotifer.genome.data.NeighborhoodDF

Made with Sphinx and Shibuya theme.