rotifer.db.methods.SequenceCursor#

class rotifer.db.methods.SequenceCursor[source]#

Bases: object

Mixin for cursors that return Bio.SeqRecord objects.

getids(obj)[source]#

Extract accessions from sequence records.

Parameters:

objBio.SeqRecord.SeqRecord or list of Bio.SeqRecord.SeqRecord: Sequence records produced by the cursor.

Returns:

set of str: The record identifiers.