rotifer.db.methods

Mixin classes shared by cursors of the same data type.

Each mixin in this module implements behavior that depends on the kind of data a cursor returns (sequences, identical protein reports, genome records, feature tables or gene neighborhoods) but not on where the data comes from. Concrete cursors combine one of these mixins with a transport class such as rotifer.db.parallel.SimpleParallelProcessCursor or rotifer.db.delegator.SequentialDelegatorCursor.

Classes

GeneNeighborhoodCursor()	Mixin for cursors that return gene neighborhood dataframes.
GenomeCursor()	Mixin for cursors that return annotated genome sequences.
GenomeFeaturesCursor()	Mixin for cursors that return genome annotation as dataframes.
IPGCursor()	Mixin for cursors that return identical protein group reports.
MappingCursor()	Mixin for cursors that translate identifiers through UniProt.
SequenceCursor()	Mixin for cursors that return Bio.SeqRecord objects.